PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009661
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 172aa    MW: 18558.7 Da    PI: 10.262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009661genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1961111255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa a++ a+ +++g
  Cla009661  61 HYRGVRQRP-WGKYAAEIRDSTR---HgARVWLGTFATAEEAALAYDTAAFNMRG 111
                8********.**********422...25*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-2860119No hitNo description
Gene3DG3DSA:3.30.730.106.8E-3260119IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2361121IPR016177DNA-binding domain
PfamPF008471.3E-1461111IPR001471AP2/ERF domain
SMARTSM003801.7E-3761125IPR001471AP2/ERF domain
PROSITE profilePS5103223.15661119IPR001471AP2/ERF domain
PRINTSPR003673.3E-116273IPR001471AP2/ERF domain
PRINTSPR003673.3E-1185101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVLASHSHSD LPFNENDSQD MVIYQVLNGP MSSHSTLPPA ADQPNADRRL HPPARTIAKK  60
HYRGVRQRPW GKYAAEIRDS TRHGARVWLG TFATAEEAAL AYDTAAFNMR GPKALLNFPP  120
EVVAAAAAAA KTTTFPPSKR KLNAESSGSS SSTISIATSR SESDSSAADR IR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3160122466ATERF1
3gcc_A2e-3160122466ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-167LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-167LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439787.11e-94PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046817e-51PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A0A0KKA56e-89A0A0A0KKA5_CUCSA; Uncharacterized protein
STRINGPOPTR_0004s05100.14e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-31ethylene response factor 1